The pathways created and Wikipathways pathways can be exported in html format with backpages. The pathways can also be exported with the data visualized on them.

No data visualized

R code:

xml.rpc(server,"PathVisio.exportPathwayHtml","/home/anwesha/Results/Test Pathway.gpml", "/home/anwesha/PathVisio-Data/gene-databases","/home/anwesha/Results")
xml.rpc(server,"PathVisio.exportPathwayHtmlFromURI","WP1", "/home/anwesha/PathVisio-Data/gene-databases","/home/anwesha/Results")

Python code:

server.PathVisio.exportPathwayHtml("/home/anwesha/Results/Test Pathway.gpml", "/home/anwesha/PathVisio-Data/gene-databases","/home/anwesha/Results")
server.PathVisio.exportPathwayHtmlFromURI("WP1", "/home/anwesha/PathVisio-Data/gene-databases","/home/anwesha/Results")
Data visualized

R code:

xml.rpc(server,"PathVisio.visualizeData","/home/anwesha/Results/Test Pathway.gpml", "/home/anwesha/PathVisio-Data/data.txt.pgex","/home/anwesha/Results")
xml.rpc(server,"PathVisio.visualizeDataByURI","WP1", "/home/anwesha/PathVisio-Data/data.txt.pgex","/home/anwesha/Results")

Python code:

server.PathVisio.visualizeData("/home/anwesha/Results/Test Pathway.gpml", "/home/anwesha/PathVisio-Data/data.txt.pgex","/home/anwesha/Results")
server.PathVisio.visualizeDataByURI("WP1", "/home/anwesha/PathVisio-Data/data.txt.pgex","/home/anwesha/Results")