WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
Slenter DN, Kutmon M, Hanspers K, Riutta A, Windsor J, Nunes N, Mélius J, Cirillo E, Coort SL, Digles D, Ehrhart F, Giesbertz P, Kalafati M, Martens M, Miller R, Nishida K, Rieswijk L, Waagmeester A, Eijssen LMT, Evelo CT, Pico AR, Willighagen EL.
Nucleic Acids Res. 2018 Jan 4;46(D1):D661-D667.
The database content was retrieved through the WikiPathways webservice.
The LinkSets were created with the Generic Converter script version 1.1.
Don’t forget to first unzip all LinkSet files that you want to use and put them in the same folder.
|Date||WikiPathways release||LinkSet||Species||Interactions||Pathways||Genes||Supported gene identifiers||Comment|
|2018-05-10||WikiPathways release May 2018||wikipathways-hsa-20180510.zip||Homo sapiens (hsa)||18,716||431||5,942||Ensembl, NCBI Gene, HGNC||Only pathways in the curated collection are included|
|2018-05-10||WikiPathways release May 2018||wikipathways-mmu-20180510.zip||Mus musculus (mmu)||9,343||173||4,519||Ensembl, NCBI Gene, HGNC||Only pathways in the curated collection are included|
|2018-05-10||WikiPathways release May 2018||wikipathways-rno-20180510.zip||Rattus norvegicus (rno)||6,601||152||3,259||Ensembl, NCBI Gene, HGNC||Only pathways in the curated collection are included|
|2018-03-10||WikiPathways release March 2018||wikipathways-hsa-20180310.zip||Homo sapiens (hsa)||18,058||428||5,846||Ensembl, NCBI Gene, HGNC||Only pathways in the curated collection are included|