WikiPathways LinkSets


WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
Slenter DN, Kutmon M, Hanspers K, Riutta A, Windsor J, Nunes N, Mélius J, Cirillo E, Coort SL, Digles D, Ehrhart F, Giesbertz P, Kalafati M, Martens M, Miller R, Nishida K, Rieswijk L, Waagmeester A, Eijssen LMT, Evelo CT, Pico AR, Willighagen EL.
Nucleic Acids Res. 2018 Jan 4;46(D1):D661-D667.
doi: 10.1093/nar/gkx1064

WikiPathways website: www.wikipathways.org
WikiPathways license: CC0


The database content was retrieved through the WikiPathways webservice.

The LinkSets were created with the Generic Converter script version 1.1.

Don’t forget to first unzip all LinkSet files that you want to use and put them in the same folder.

Date WikiPathways release LinkSet Species Interactions Pathways Genes Supported gene identifiers Comment
2018-05-10 WikiPathways release May 2018 wikipathways-hsa-20180510.zip Homo sapiens (hsa) 18,716 431 5,942 Ensembl, NCBI Gene, HGNC Only pathways in the curated collection are included
2018-05-10 WikiPathways release May 2018 wikipathways-mmu-20180510.zip Mus musculus (mmu) 9,343 173 4,519 Ensembl, NCBI Gene, HGNC Only pathways in the curated collection are included
2018-05-10 WikiPathways release May 2018 wikipathways-rno-20180510.zip Rattus norvegicus (rno) 6,601 152 3,259 Ensembl, NCBI Gene, HGNC Only pathways in the curated collection are included
2018-03-10 WikiPathways release March 2018 wikipathways-hsa-20180310.zip Homo sapiens (hsa) 18,058 428 5,846 Ensembl, NCBI Gene, HGNC Only pathways in the curated collection are included